Vertebrate Animal Care and Use at MLML

Aquarium Room Standard Operating Procedures | Direct link to SJSU IACUC | Senate Resolution F06-4

Here we hope to provide you with the basics regarding vertebrate animals and their use in research.  All research and teaching acvities at Universities, nationwide, are subject to certain federal guidelines as set forth by the Animal Welfare Act (1966, and 1985 most recent update) and the Guide for the Care and Use of Laboratory Animals (NRC, 1996).  Only mammals, and only certain mammals at that, are what is known as "covered species", meaning they have special requirements because they have been identified in the Animal Welfare Act.  But, any vertebrate under study using Federal funds (or even just equipment purchased with Federal funds) requires a protocol as established by The Guide.  The Federal government charged univeristies with creating Institutional Animal Care and Use Committees and gave them the task of ensuring that these guidelines are met.  Each univeristy should have an IACUC committee if vertebrates are used in research or teaching activities.  Any research or teaching activity using vertebrate species should have an IACUC protocol in place prior to the initiation of the activity.  

Because the grants and contracts of MLML are administered by SJSU Foundation, SJSU's IACUC reviews and approves MLML animal protocols.  For students from home campuses other than SJSU, we are working on Memoranda of Understanding (MOUs) that would allow SJSU's IACUC to be the body that receives and approves your protocol.  If SJSU accepts it, then your home campus would be bound by the MOU to also accept it and you need only send a copy of the complete protocol and approval letter to your home campus IACUC for their records.  This will prevent you from having to apply twice, as several students are faced with presently.

Currently, the MLML representative on the SJSU IACUC is Dr. Lara Ferry-Graham.  Lara tries to make sure that the committee understands the nature of the animal work conducted at MLML, and to ensure that the perspective of a field- and lab-based marine animal researcher is represented in the IACUC's decision making process.  You can send questions to her, or even drafts of proposals if you would like comments, especially graduate students who are new to the process.

Where else to turn for help?  You can contact Larry Young at Animal Care at SJSU (408-924-4929 or lyoung@science.sjsu.edu).  He oversees the day to day business of the IACUC and can help to guide you through the process. 
Completed applications are submitted to Larry.  He can typically faciliate electronic submissions, which allows him to send it out to the committee more quickly.  His extended zip at SJSU is 0100 for campus mail.  Snail mail (which is faster than campus mail most of the time) is Animal Care, DH-244, San Jose State University, One Washington Square, San Jose, CA 95192-0100.  FAX 408-924-4840.

Jump straight to the forms for download

FAQs:
Why do we really need an IACUC?
It would be nice if bodies like the IACUC were unnecessary.  Unfortunately, a handful of unethical scientists made that an impossibility.  The public is demanding justification for the use of animals in research, and assurance that the studies are truly necessary and the animals are well treated.  Federal funding agencies have answered that cry by demanding the same of their applicants.  IACUC protocols are now simply a part of the grant application, and general research, process.

Why do I need IACUC permission to do my research if I already have a collecting permit?
The collecting permit, and the like, ensures only that your taking of the animal does not hurt natural populations of that animal.  IACUC is charged with ensuring that you take and otherwise use the animal humanely.  More specifically, the USDA has recently charged the IACUC with ensuring the three "R's" are met wherever possible. Reduction in the numbers of animals used, Refinement of techniques to minimize pain or distress, or Replacement with non-animal techniques.  The IACUC also works to make sure that the experiments proposed do not unnecessarily Replicate other experiments, thereby wasting animal life.  If you are working on a vertebrate animal at MLML, or your work impacts vertebrate animals, you need an approved IACUC protocol prior to beginning the work.  You also need approval if you are teaching a class that involves vertebrate animals.

Who is the IACUC and how can I be sure that they can really evaluate MY proposal effectively?
At SJSU the IACUC is a body composed of largely scientists who use animals in their own research.  These include both laboratory and field biologists, marine and terrestrial, and we have a safety officer.  The IACUC is also required to have non-scientists and non-university members, as a sort of checks and balances.  The IACUC is chaired by an member of the committee and is overseen by the Institutional Official, which is currently housed in Graduate Studies at SJSU.  The committee understands, firsthand, that studies of animals are needed and your proposal is not going to be unfairly judged just because you want to use animals.  They do not aim to be a roadblock between you and your research.  Note that there are many valid reasons for animal research and the committee will readily recognize those if you take the time to explain and document them.  

However, the committee does not and cannot have expertise in every area of animal research, especially marine animal research.  Much of the deliberation about proposals occurs at meetings, but if I am not present (which happens, due to scheduling conflicts), then simple questions will go unanswered until you, the PI, are contacted and respond directly.  As an MLML'er, there a things you can add to your application that will help ensure that the time spent in the review process is not lengthened by having to ask you silly questions and then wait for answers that may seem obvious to you.  This means being sure to include things like the front and back of your CDF&G permit, and adding a few extra sentences in your narrative to note the scope of your permit(s), the expemption(s) you have been allowed, and what this translates into in terms of the numbers and kinds of animals that you can take in a collecting session or in a year, where you can legitimately collect, how this matches up with your proposed sampling design, and so on.  

How will the IACUC find out I am doing animal research if I don't tell them?  What are the consequences of non-compliance?
IACUC must conduct semi-annual inspections of the sites that it is charged with overseeing.  At MLML, the Aquarium Room and the Sea Lion facility (SLEWTHS) are inspected at this time.  Note that the IACUC itself is also is subject to both internal and external review every six months which includes unannounced inspections of the IACUC records and checks of compliance by the USDA.  If the USDA officer finds missing pieces then SJSU will be cited for them.  MLML too can be cited in this way by the USDA for violations.  
 The point of the IACUC inspection is to avoid and prevent citations.  If citations are not corrected by the time noted, facilities can (and have been at SJSU) shut down.  At this point, federal funding to all researchers within the facility (i.e., MLML as a whole) is also in jeopardy.  Federal agencies like NSF and NIH require compliance with IACUC.  For these agencies, you have to have an IACUC application in place to even proceed with a grant application.  SJSU Foundation is now routinely screening all grant applications for any federal funding source and will not allow you to use your money, once awarded, until an approved IACUC protocol is in place.  More practically, if you are a graduate student, you may be required to omit any work from your thesis or subsequent publications that was collected prior to IACUC approval, and you can be denied graduation by Graduate Studies if IACUC approval was never granted.  Note that if you are a student from a home campus other than SJSU, you are still bound by SJSU rules because of the source of funds and equipment.  Again, this is why we are so actively pursueing the MOUs with the other campuses.  Once your SJSU IACUC application is approved, you should be sure to route a copy to your home campus IACUC so that your graduation is not hindered in any way by this process.

What if I am getting dead samples from some other source and am not killing the animals myself?

IACUC has a "short form" for this.  It is a simple one-page form.  If you are collecting dead or stranded animals, or animals that are part of a commercial fishing operation, for example, the form is straight forward.  Just provide the sources or locations and copies of any necessary permits.  If you are using animals collected by another research institution or individual, you should provide assurance that there is IACUC approval in place at that institution by providing the PI name, protocol number and dates that it is valid at the very least.   If the animals come from a study by Fish and Game or some "exempt" agency, you'd just need to explain that to the committee and provide assurances that the animals are/were being killed as humanely as possible.  If it is simply the use of animal parts, like an otolith archive, then it should be fairly easy to explain.  In general, using animals taken as part of another study is a great way to extend their scientific value, which IACUC fully supports.

Do I need to submit a protocol for each grant?
The answer to this is "it depends".  If the grants are very similar in nature (i.e., the same study in two locations), then you may be able to combine them under one IACUC protocol.  If they are very different, then you are likely going to need different protocols to adequately explain the different techniques to be employed.  This can be to your advantage.  For example, if one protocol expires, then you (hopefully) still have the second in place which prevents your research program from shutting down entirely.

How long are proposals good for?
You can define the time limit of your study up to a maximum of three years.  Each year you will be asked to provide an annual report to keep your protocol in good standing.  You will be sent a reminder from the IACUC for this report.

Forms for download (word docs):
Standard Protocol application
Pain and Distress Guidelines
Short-form for tissue only
Short-form for observational studies (recommended, not required unless you are entering an area that requires special permits or permission)
Short-form for invertebrate studies (recommended, not required)

Sample Protocol Narratives and Annual Reports (word and pdf docs):
NOTE:  We provide these to give you some example of well-received protocols.  Each of these still may have had minor issues needing clarification prior to acceptance.  Please keep in mind that every project is different, and the composition of the IACUC changes over time, so new and valid
questions may arise in response to your application even if you follow these templates exactly.
Marine Ichthyology Classroom Protocol (PIs: Cailliet, Ferry-Graham)

Functional Morphology of Prey Capture in Marine Fishes and Elasmobranchs (PI: Ferry-Graham)
Aspects of Reproduction in the Eelpouts, Family Zoarcidae (PI: Ferry-Graham)
Embryology, reproductive biology, and age and growth of Pacific sharks, skates, and rays (PI: Cailliet, Flammang)
Diving and Hematology of the Common Murre in Monterey Bay (PIs: Harvey, Nevins)
Annual Report - Diving and Hematology of the Common Murre in Monterey Bay (PIs: Harvey, Nevins)

Other sources of useful information:
A more complete description of the role of the IACUC as set forth by the USDA can be found here:
http://www.nal.usda.gov/awic/pubs/IACUC/iacuc.html

Association for Assessment and Accreditation of Laboratory Animal Care International: http://www.aaalac.org/
NIH Animal Care: http://oacu.od.nih.gov/
Office of Laboratory Animal Welfare: http://grants.nih.gov/grants/olaw/ 
USDA and Animal Welfare Act: http://www.aphis.usda.gov/ac/
USDA policies: http://www.aphis.usda.gov/ac/polmanpdf.html  (accepted practices of euthanasia: http://www.nal.usda.gov/awic/pubs/noawicpubs/avmaeuth.htm)
Animal Alternatives: http://altweb.jhsph.edu/

Department of the Interior - Endangered Species Act: http://endangered.fws.gov/
International Regulations for Animal Importation and Use:  http://www.cites.org/
CA Fish and Game: http://www.dfg.ca.gov/index.html
Use of Controlled Substances: http://www.usdoj.gov/dea/ 


Fishes: http://www.nal.usda.gov/awic/pubs/Fishwelfare/iacuc.htm#euth
Marine Mammals: http://www.nmfs.noaa.gov/prot_res/laws/MMPA/MMPA.html
Migratory Birds: http://migratorybirds.fws.gov/intrnltr/treatlaw.html

Also remember to check the website(s) of the scientific societies to which you belong for guidelines on animal use, you can provide this information as evidence for standard acceptable treatment, care, and use:
Mammal Society: http://www.mammalsociety.org/  (Mammal studies)
Society for the Study of Reptiles and Amphibians: http://www.ssarherps.org/  (Amphibians and Reptile studies)
American Society of Ichthyologists and Herpetologists:  http://www.asih.org/ (Fish studies)


MLML link
Page created and maintained by Lara Ferry-Graham
last update 24 April 2006